(UPDATE) I know it's been a while but if anyone is having the same problem I hope this helps,
Problem 1 overheating: this was due to a bad fuse holder that connected to one of the fans, cut it out and soldered another inline fuse in there, that sorted that.
Problem 2 alternator: this has taken me many months to figure out and after 3 alternators and rebuilding one 2 times I have finally found the problem,
The battery light that is supposed to connect to the alternator to energise the fields was connected to 12v with no resistance, this should be a connection from ingition through a charge bulb or a resistor.
The problem is now fixed by running an inline 1/2 w 470ohm resistor to the charge light terminal on the alternator, this has fixed all issues and she is running sweeter than ever.
Again I hope this helps and thanks to everyone here for the suggestions and help